Basic Information
Locus ID:
Zosma06g07010.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 3932113 | 3934348 | + | Zosma06g07010.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 56,880.25 Da | 58.96 | 59.94 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 328 | 354 | 4.1E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 294 | 316 | 9.9E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 249 | 273 | 1.0E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 245 | 276 | 1.8E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 289 | 319 | 2.12E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 241 | 277 | 2.5E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 323 | 356 | 4.9E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 286 | 322 | 4.3E-11 | - |
| SMART | SM00547 | zf_4 | 251 | 275 | 1.8E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 295 | 319 | 1.6E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 328 | 352 | 0.0012 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 326 | 355 | 9.43879 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 293 | 322 | 9.167777 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 249 | 278 | 9.2807 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 330 | 349 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 253 | 272 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 460 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_010471065.1 | - | 0 |
| TrEMBL | A0A0K9NIF3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology