Basic Information
Locus ID:
Zosma06g02260.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 1228986 | 1230620 | - | Zosma06g02260.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 53,190.94 Da | 47.89 | 74.69 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 182 | 454 | 6.24522E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 369 | 0.0077 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 280 | 315 | 9.5E-7 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 198 | 256 | 2.2E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 419 | 454 | 0.0039 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 172 | 454 | 3.3E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 105 | 457 | 6.2E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 327 | 369 | 0.0021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 272 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 315 | 2.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 8.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 412 | 80.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 415 | 454 | 2.0E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 199 | 231 | 9.09833 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 283 | 324 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 240 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 422 | 455 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 422 | 455 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 283 | 317 | 11.523771 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 302 | 316 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 441 | 455 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_039142445.1 | cell division cycle 20.2, cofactor of APC complex-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q079 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology