Basic Information
Locus ID:
Zosma06g01650.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 978116 | 978712 | + | Zosma06g01650.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 21,457.15 Da | 30.25 | 72.32 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 168 | 3.51E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 103 | 1.4E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 104 | 178 | 4.3E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 101 | 141 | 6.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 53 | 93 | 1.3E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 60 | 102 | 9.138305 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_009403502.1 | PREDICTED: uncharacterized protein LOC103987014 [Musa acuminata subsp. malaccensis] | 0 |
| TrEMBL | A0A0K9NYT5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08570 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g20470 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g13010 |
| Zosteraceae | Zostera marina | 2 | Zosma01g42490.v3.1, Zosma06g01650.v3.1 |