Basic Information
Locus ID:
Zosma06g01360.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 836419 | 837366 | - | Zosma06g01360.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 35,130.68 Da | 55.16 | 66.54 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 154 | 197 | 4.44146E-18 | - |
| Pfam | PF13639 | Ring finger domain | 154 | 197 | 2.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 208 | 9.59E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 201 | 4.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 155 | 196 | 8.7E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 151 | 204 | 0.0098 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 197 | 12.769585 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 263 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010919941.1 | E3 ubiquitin-protein ligase Os04g0590900 [Elaeis guineensis] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9P1B5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology