Basic Information
Locus ID:
Zosma06g00740.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 522974 | 534233 | - | Zosma06g00740.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 138,211.73 Da | 48.19 | 76.02 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 29 | 155 | 7.85421E-28 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1084 | 1127 | 6.47922E-18 | - |
| CDD | cd12108 | Hr-like | 614 | 774 | 1.62212E-20 | - |
| CDD | cd12108 | Hr-like | 286 | 411 | 1.1051E-11 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 56 | 157 | 2.0E-9 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1132 | 1189 | 7.1E-22 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 955 | 1030 | 8.9E-17 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1084 | 1126 | 9.8E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1082 | 1140 | 5.78E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 949 | 1011 | 3.01E-15 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1021 | 1076 | 1.83E-16 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 1155 | 1194 | 2.0E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 605 | 847 | 2.6E-20 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 286 | 428 | 9.4E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 27 | 174 | 7.4E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1079 | 1129 | 1.2E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 1085 | 1126 | 2.3E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1020 | 1084 | 29.620533 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 948 | 1017 | 23.799873 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1085 | 1127 | 11.397556 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_039142956.1 | - | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PWX2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology