Basic Information
Locus ID:
Zosma06g00430.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 345939 | 346421 | + | Zosma06g00430.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.50 | 17,735.00 Da | 36.92 | 89.69 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 11 | 73 | 1.67168E-14 | IPR002048 |
| CDD | cd00051 | EFh | 86 | 148 | 2.20271E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 85 | 147 | 8.7E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 11 | 72 | 9.9E-11 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 8 | 147 | 5.49E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 3 | 78 | 1.1E-16 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 79 | 154 | 9.8E-23 | - |
| SMART | SM00054 | efh_1 | 47 | 75 | 0.59 | IPR002048 |
| SMART | SM00054 | efh_1 | 11 | 39 | 0.0034 | IPR002048 |
| SMART | SM00054 | efh_1 | 86 | 114 | 1.4E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 122 | 150 | 3.0E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 82 | 117 | 14.764463 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 118 | 153 | 12.755995 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 43 | 78 | 10.747526 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 7 | 42 | 13.14653 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 20 | 32 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 131 | 143 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 56 | 68 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 95 | 107 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_020572020.1 | - | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NU04 | Putative calcium-binding protein CML16 OS=Zostera marina OX=29655 GN=ZOSMA_68G00270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology