Basic Information
Locus ID:
Zosma05g28280.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 29016357 | 29017584 | - | Zosma05g28280.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 30,252.06 Da | 47.57 | 86.85 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 80 | 128 | 6.02649E-18 | - |
| Pfam | PF12906 | RING-variant domain | 80 | 127 | 4.2E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 76 | 131 | 1.41E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 140 | 6.6E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 79 | 128 | 1.8E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 72 | 134 | 20.589945 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_028075401.1 | - | 0 |
| TrEMBL | A0A0K9Q3C2 | E3 ubiquitin-protein ligase MARCH2 OS=Zostera marina OX=29655 GN=ZOSMA_11G00380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology