Basic Information
Locus ID:
Zosma05g27010.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 27995516 | 28001352 | - | Zosma05g27010.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 114,397.32 Da | 43.62 | 70.27 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 165 | 470 | 4.05869E-148 | - |
| Pfam | PF01753 | MYND finger | 82 | 119 | 4.2E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 166 | 469 | 7.8E-43 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 79 | 121 | 4.88E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 163 | 472 | 5.1E-86 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 160 | 484 | 5.6E-90 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 69 | 124 | 3.1E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 166 | 472 | 49.058449 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 82 | 119 | 11.93971 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 82 | 119 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 167 | 182 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_008789702.2 | ubiquitin carboxyl-terminal hydrolase 18-like isoform X2 [Phoenix dactylifera] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PM34 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Zostera marina OX=29655 GN=ZOSMA_218G00140 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology