Basic Information
Locus ID:
Zosma05g26370.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 27228084 | 27242323 | - | Zosma05g26370.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 96,307.46 Da | 74.09 | 64.80 | -1.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 789 | 828 | 9.48409E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 787 | 833 | 3.4E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 788 | 834 | 2.21E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 771 | 839 | 1.7E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 789 | 828 | 10.600894 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 326 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_019705265.1 | uncharacterized protein LOC105042919 [Elaeis guineensis] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PGB9 | RING/U-box superfamily protein OS=Zostera marina OX=29655 GN=ZOSMA_26G00360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology