Basic Information
Locus ID:
Zosma05g23090.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 24479085 | 24479810 | + | Zosma05g23090.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 25,624.89 Da | 46.70 | 67.26 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 38 | 82 | 2.64649E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 39 | 80 | 3.0E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 35 | 93 | 3.74E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 107 | 3.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 40 | 80 | 2.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 40 | 81 | 13.315446 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 55 | 64 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 28 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034675754.1 | - | 0 |
| Q568Y3 | E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus OX=10116 GN=Rnf185 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PSY7 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_16G01060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology