Basic Information
Locus ID:
Zosma05g22500.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 23908667 | 23913921 | + | Zosma05g22500.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 86,271.57 Da | 44.46 | 73.13 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 505 | 790 | 3.02947E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 672 | 707 | 3.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 510 | 541 | 0.018 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.4E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 756 | 790 | 0.028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 551 | 583 | 5.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 590 | 626 | 0.061 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 501 | 790 | 9.89E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 643 | 790 | 1.1E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 488 | 642 | 1.4E-30 | IPR015943 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0069 | IPR006594 |
| SMART | SM00320 | WD40_4 | 544 | 583 | 5.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 502 | 541 | 9.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 669 | 707 | 1.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 710 | 749 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 751 | 790 | 4.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 587 | 627 | 2.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 630 | 666 | 94.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 594 | 636 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 551 | 583 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 676 | 716 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 509 | 550 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 758 | 790 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 551 | 583 | 10.126507 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 758 | 790 | 12.288313 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.118613 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 415 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_042517296.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Macadamia integrifolia] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PNJ9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology