Basic Information
Locus ID:
Zosma05g22360.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 23755575 | 23760988 | - | Zosma05g22360.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 79,736.66 Da | 43.16 | 88.59 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 280 | 416 | 1.37751E-70 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 279 | 5.05209E-130 | - |
| Pfam | PF16124 | RecQ zinc-binding | 419 | 475 | 1.1E-10 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 91 | 258 | 3.1E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 310 | 406 | 4.5E-16 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 604 | 664 | 1.3E-5 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 128 | 421 | 8.89E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 48 | 279 | 1.5E-90 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 280 | 476 | 2.1E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 479 | 579 | 1.9E-19 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 599 | 668 | 3.9E-8 | IPR044876 |
| SMART | SM00487 | ultradead3 | 85 | 286 | 2.6E-24 | IPR014001 |
| SMART | SM00490 | helicmild6 | 326 | 407 | 4.5E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 82 | 513 | 2.2E-161 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 297 | 446 | 19.671024 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 97 | 272 | 23.794359 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 595 | 674 | 11.687595 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 704 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_038979711.1 | ATP-dependent DNA helicase Q-like 2 isoform X4 [Phoenix dactylifera] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PP68 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology