Basic Information
Locus ID:
Zosma05g19570.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 21484183 | 21486065 | - | Zosma05g19570.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 52,382.73 Da | 53.45 | 84.78 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 245 | 293 | 1.26611E-16 | - |
| Pfam | PF12906 | RING-variant domain | 245 | 292 | 1.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 241 | 296 | 3.0E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 300 | 6.8E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 244 | 293 | 2.3E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 237 | 299 | 19.423166 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020241403.1 | uncharacterized protein LOC109819867 isoform X1 [Asparagus officinalis] | 0 |
| TrEMBL | A0A0K9Q1T5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology