Basic Information
Locus ID:
Zosma05g17390.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 17744103 | 17754724 | + | Zosma05g17390.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 40,293.64 Da | 47.55 | 83.63 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 8.56426E-28 | - |
| Pfam | PF00627 | UBA/TS-N domain | 329 | 364 | 7.2E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 145 | 180 | 5.2E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.5E-15 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 248 | 303 | 6.6E-22 | IPR015360 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 80 | 3.22E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 139 | 190 | 5.34E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 310 | 370 | 2.5E-13 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 245 | 311 | 2.09E-21 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 2.8E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 320 | 368 | 1.1E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 240 | 304 | 1.3E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 135 | 185 | 1.2E-20 | - |
| SMART | SM00727 | CBM | 244 | 289 | 1.5E-4 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.4E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 329 | 366 | 3.7E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 142 | 182 | 0.0012 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 372 | 1.2E-120 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 140 | 183 | 12.498699 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 326 | 367 | 15.269866 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.800598 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 323 | 339 | 1.9E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 355 | 370 | 1.9E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 340 | 354 | 1.9E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 274 | 296 | 1.9E-28 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 112 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_020103402.1 | ubiquitin receptor RAD23b-like isoform X1 [Ananas comosus] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A6P5GBY7 | Ubiquitin receptor RAD23 OS=Ananas comosus OX=4615 GN=LOC109720585 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology