Basic Information
Locus ID:
Zosma05g16690.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
AN1-like Zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 14490493 | 14490765 | - | Zosma05g16690.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 10,076.32 Da | 33.62 | 60.67 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01754 | A20-like zinc finger | 48 | 70 | 1.3E-12 | IPR002653 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 48 | 78 | 1.57E-11 | - |
| Gene3D | G3DSA:1.20.5.4770 | - | 38 | 88 | 9.0E-18 | - |
| SMART | SM00259 | A20_3 | 46 | 70 | 1.2E-7 | IPR002653 |
| ProSiteProfiles | PS51036 | Zinc finger A20-type profile. | 43 | 77 | 10.305914 | IPR002653 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27580.1 | A20/AN1-like zinc finger family protein. | 0 |
| RefSeq | XP_009412395.1 | - | 0 |
| Q6Z541 | Zinc finger A20 and AN1 domain-containing stress-associated protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P0P6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13305 |
| Zosteraceae | Zostera marina | 5 | Zosma05g16690.v3.1, Zosma05g16700.v3.1, Zosma05g16720.v3.1 ... |