Basic Information
Locus ID:
Zosma05g16550.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 13773936 | 13803041 | + | Zosma05g16550.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 129,633.06 Da | 40.35 | 75.81 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 597 | 729 | 2.21572E-72 | - |
| CDD | cd17920 | DEXHc_RecQ | 394 | 596 | 1.18135E-95 | - |
| Pfam | PF16124 | RecQ zinc-binding | 731 | 795 | 4.2E-14 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 409 | 573 | 1.1E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 613 | 719 | 1.8E-17 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 980 | 1025 | 6.0E-8 | IPR002121 |
| Pfam | PF09382 | RQC domain | 804 | 917 | 5.6E-18 | IPR018982 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 264 | 738 | 2.25E-40 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 595 | 843 | 1.06E-58 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 952 | 1033 | 4.14E-10 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 369 | 596 | 6.6E-89 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 803 | 913 | 3.4E-17 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 597 | 798 | 7.6E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 949 | 1040 | 4.4E-12 | IPR044876 |
| SMART | SM00490 | helicmild6 | 639 | 720 | 6.5E-26 | IPR001650 |
| SMART | SM00956 | RQC_2 | 805 | 916 | 7.0E-20 | IPR018982 |
| SMART | SM00487 | ultradead3 | 402 | 605 | 8.1E-28 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 398 | 856 | 3.8E-161 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 414 | 589 | 21.222813 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 951 | 1035 | 12.944197 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 611 | 758 | 19.860241 | IPR001650 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 629 | 671 | 8.518409 | IPR001763 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1033 | 1059 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1034 | 1055 | - | - |
| Coils | Coil | Coil | 264 | 291 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_038989126.1 | ATP-dependent DNA helicase Q-like 4A [Phoenix dactylifera] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9AQS0 | DNA helicase OS=Phoenix dactylifera OX=42345 GN=LOC103701408 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology