Basic Information
Locus ID:
Zosma05g14660.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 10227799 | 10228506 | - | Zosma05g14660.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 26,487.60 Da | 70.13 | 73.79 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 187 | 224 | 4.81672E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 186 | 228 | 1.4E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 231 | 3.3E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 176 | 235 | 1.8E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 224 | 3.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 225 | 10.733671 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 143 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010241393.1 | - | 0 |
| TrEMBL | A0A0K9PGT5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology