Basic Information
Locus ID:
Zosma05g07640.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Serine-threonine kinase receptor-associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 4751706 | 4758079 | - | Zosma05g07640.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 97,942.98 Da | 44.54 | 88.82 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 70 | 121 | 2.73378E-23 | - |
| CDD | cd00200 | WD40 | 590 | 851 | 3.33899E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 716 | 750 | 0.09 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 801 | 834 | 7.5E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 590 | 625 | 5.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 630 | 666 | 0.13 | IPR001680 |
| Pfam | PF12906 | RING-variant domain | 70 | 120 | 6.4E-11 | IPR011016 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 305 | 669 | 3.37E-31 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 541 | 835 | 5.16E-65 | IPR036322 |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 125 | 4.94E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 134 | 5.8E-18 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 545 | 858 | 1.2E-74 | IPR015943 |
| Gene3D | G3DSA:2.120.10.30 | - | 290 | 488 | 1.3E-9 | IPR011042 |
| SMART | SM00320 | WD40_4 | 541 | 583 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 670 | 710 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 753 | 792 | 130.0 | IPR001680 |
| SMART | SM00744 | ringv_2 | 69 | 121 | 1.2E-16 | IPR011016 |
| SMART | SM00320 | WD40_4 | 586 | 625 | 8.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 713 | 750 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 666 | 7.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 795 | 834 | 2.0E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 802 | 836 | 12.472858 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 593 | 625 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 593 | 634 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 802 | 836 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 62 | 127 | 21.976351 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15610.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_034896234.1 | serine-threonine kinase receptor-associated protein-like [Populus alba] | 0 |
| Q54LT8 | Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum OX=44689 GN=strap PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9NVH2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18212 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10669 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014442 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g195310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24858, Sbi_jg8722 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19881 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007895 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42113, Sgl46884 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009451, gene:ENSEOMG00000032076 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0021050, CQ.Regalona.r1.8BG0021360 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30127420, pistato.v30255770, pistato.v30294530 |
| Apiaceae | Apium graveolens | 5 | Ag3G02785, Ag5G00122, Ag9G01159, AgUnG00130, AgUnG00167 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G016610 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704057, gene-LOC103708801 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2389.V1.1, AsparagusV1_06.918.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G31754, Ftri1G06377, Ftri9G23247 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G15470.1, AT1G52730.2, AT3G15610.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10008159m.g.v1.0, Thhalv10011626m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g13830.v2.2, Sp1g39300.v2.2, Sp3g13900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g026310.2N, BniB06g040860.2N, BniB07g003340.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2808, Ceq06G0683 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0707 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g02060, gene.Cymno12g00150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0018s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32750 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3257 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.423 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015454 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03918 |
| Poaceae | Echinochloa crus-galli | 8 | AH06.2195, AH07.776, BH06.2032, BH07.4035, BH07.911 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0105670, gene-QOZ80_2BG0159080 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0476660.1, HORVU.MOREX.r3.7HG0714120.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004817, gene-QYE76_034769, gene-QYE76_034901 |
| Poaceae | Oryza coarctata | 3 | Oco04G005510, Oco11G012170, Oco12G012350 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g11060.1, LOC_Os06g39760.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G080200, gene-BS78_10G181700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400620, Pt_Chr0702420 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G029680, Chr05G007340, Chr10G017440, Chr11G005060 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G328600, Tel7E01G602700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG031710, gene_TRIDC5BG033380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G189200.2, TraesCS5B02G194400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb276870_P001, Zm00001eb385880_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10113, nbis-gene-41091, nbis-gene-44033 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g15165, Zma_g30771, Zma_g33017 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1469, evm.TU.LG26.194 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g24840, gene.Posoc09g12190 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1228 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-28056, nbisL1-mrna-6863, nbisL1-mrna-6927 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5919, nbisL1-mrna-6651 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17014, nbisL1-mrna-7885 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.361, evm.TU.utg000023l.180 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004046, Maker00018831 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16361, nbisL1-mrna-7302 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18048, nbisL1-mrna-21230 |
| Salicaceae | Populus euphratica | 2 | populus_peu02832, populus_peu33698 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633321 |
| Solanaceae | Solanum chilense | 1 | SOLCI003056100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014720 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_8559, gene_8887 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1644 |
| Zosteraceae | Zostera marina | 1 | Zosma05g07640.v3.1 |