Basic Information
Locus ID:
Zosma05g03370.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Nuclear transcription factor Y
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 1811928 | 1813467 | + | Zosma05g03370.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 10,419.47 Da | 50.50 | 67.08 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 55 | 96 | 1.5E-14 | IPR003958 |
| SUPERFAMILY | SSF47113 | Histone-fold | 51 | 96 | 2.1E-14 | IPR009072 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 43 | 96 | 3.0E-17 | IPR009072 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38880.4 | nuclear factor Y, subunit B1. Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance. | 0 |
| RefSeq | XP_015692440.1 | nuclear transcription factor Y subunit B-4 isoform X2 [Oryza brachyantha] | 0 |
| Q9SLG0 | Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9NTY5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Solanum chilense | 1 | SOLCI003360700 |
| Solanaceae | Solanum pennellii | 6 | gene-LOC107019990, gene-LOC107020059, gene-LOC107020084 ... |
| Zosteraceae | Zostera marina | 1 | Zosma05g03370.v3.1 |