Basic Information
Locus ID:
Zosma05g02290.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 1185090 | 1200320 | - | Zosma05g02290.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 127,638.08 Da | 48.84 | 78.60 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 643 | 775 | 1.2812E-70 | - |
| CDD | cd17920 | DEXHc_RecQ | 443 | 642 | 2.26609E-101 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 660 | 765 | 2.5E-17 | IPR001650 |
| Pfam | PF09382 | RQC domain | 865 | 980 | 3.6E-18 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 454 | 621 | 4.9E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 777 | 857 | 3.8E-13 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 492 | 784 | 7.62E-57 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 866 | 977 | 4.62E-15 | IPR036390 |
| Gene3D | G3DSA:3.40.50.300 | - | 643 | 861 | 1.6E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 414 | 642 | 8.6E-91 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 865 | 975 | 2.4E-15 | IPR036388 |
| SMART | SM00956 | RQC_2 | 867 | 978 | 3.8E-20 | IPR018982 |
| SMART | SM00487 | ultradead3 | 448 | 651 | 8.1E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 685 | 766 | 2.0E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 444 | 918 | 1.4E-161 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 675 | 717 | 9.22996 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 660 | 812 | 20.084316 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 460 | 635 | 22.819813 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 574 | 583 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1025 | 1050 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1063 | 1086 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_038989126.1 | ATP-dependent DNA helicase Q-like 4A [Phoenix dactylifera] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NWB4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology