Basic Information
Locus ID:
Zosma04g27200.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 34489553 | 34490677 | - | Zosma04g27200.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 32,949.28 Da | 41.52 | 75.03 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 44 | 129 | 8.64599E-45 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 205 | 269 | 1.41396E-18 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 205 | 272 | 1.3E-12 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 45 | 129 | 1.3E-15 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 40 | 135 | 3.53E-24 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 197 | 276 | 1.31E-18 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 30 | 142 | 9.1E-22 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 190 | 289 | 6.7E-19 | IPR036910 |
| SMART | SM01014 | ARID_2 | 39 | 129 | 2.3E-22 | - |
| SMART | SM00398 | hmgende2 | 204 | 273 | 1.2E-13 | IPR009071 |
| SMART | SM00501 | bright_3 | 43 | 134 | 1.3E-17 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 205 | 272 | 14.048493 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 42 | 133 | 21.508226 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 292 | - | - |
| Coils | Coil | Coil | 261 | 281 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010274039.1 | - | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PQR3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology