Basic Information
Locus ID:
Zosma04g25440.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 33182427 | 33186015 | - | Zosma04g25440.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 35,000.29 Da | 41.21 | 70.41 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 5.2E-79 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 6 | 108 | 5.2E-44 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 3.2E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 306 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_011037219.1 | PREDICTED: ubiquitin fusion degradation protein 1 homolog isoform X2 [Populus euphratica] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9PGI3 | Ubiquitin fusion degradation protein OS=Zostera marina OX=29655 GN=ZOSMA_26G00790 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology