Basic Information
Locus ID:
Zosma04g25330.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 33086045 | 33087187 | - | Zosma04g25330.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 42,890.08 Da | 42.48 | 75.66 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 164 | 210 | 1.9E-11 | IPR006652 |
| Pfam | PF00646 | F-box domain | 18 | 58 | 1.4E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 121 | 162 | 1.1E-4 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 90 | 343 | 9.68E-43 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 71 | 1.05E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 68 | 2.6E-6 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 80 | 364 | 6.7E-35 | IPR015915 |
| SMART | SM00256 | fbox_2 | 20 | 60 | 9.0E-4 | IPR001810 |
| SMART | SM00612 | kelc_smart | 127 | 175 | 0.014 | IPR006652 |
| SMART | SM00612 | kelc_smart | 176 | 223 | 1.0E-9 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_009405095.1 | PREDICTED: F-box/kelch-repeat protein SKIP20-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P704 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology