Basic Information
Locus ID:
Zosma04g24440.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 32444232 | 32446438 | - | Zosma04g24440.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 26,995.59 Da | 37.97 | 73.53 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 10 | 207 | 5.67703E-137 | - |
| Pfam | PF00850 | Histone deacetylase domain | 24 | 212 | 8.4E-54 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 6 | 213 | 9.11E-73 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 4 | 223 | 7.0E-79 | IPR037138 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 133 | 156 | 5.5E-18 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 165 | 180 | 5.5E-18 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 111 | 131 | 1.2E-41 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 90 | 107 | 1.2E-41 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 59 | 77 | 1.2E-41 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 152 | 168 | 1.2E-41 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 26 | 43 | 1.2E-41 | IPR003084 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_043713425.1 | - | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PTU8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology