Basic Information
Locus ID:
Zosma04g22820.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 31526954 | 31529386 | - | Zosma04g22820.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 70,721.43 Da | 37.57 | 103.80 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 259 | 301 | 1.26565E-26 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 470 | 502 | 1.7E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 381 | 420 | 1.1E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 255 | 324 | 3.2E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 255 | 329 | 2.65E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 351 | 627 | 2.5E-48 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 327 | 9.0E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 552 | 637 | 4.1E-9 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 468 | 551 | 1.2E-14 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 339 | 467 | 5.7E-23 | IPR011989 |
| SMART | SM00185 | arm_5 | 422 | 462 | 4.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 504 | 544 | 35.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 463 | 503 | 0.93 | IPR000225 |
| SMART | SM00185 | arm_5 | 381 | 421 | 5.8E-4 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 258 | 320 | 1.2E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 545 | 585 | 16.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 474 | 508 | 10.1324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 392 | 434 | 10.0974 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 254 | 327 | 37.587147 | IPR003613 |
| Coils | Coil | Coil | 135 | 169 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_010241805.1 | - | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P582 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology