Basic Information
Locus ID:
Zosma04g22570.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 31315835 | 31317256 | + | Zosma04g22570.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 49,762.63 Da | 46.65 | 77.15 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 145 | 417 | 5.39101E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 382 | 417 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 278 | 1.1E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 161 | 219 | 1.4E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 332 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 135 | 417 | 2.01E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 70 | 420 | 1.3E-116 | IPR015943 |
| SMART | SM00320 | WD40_4 | 378 | 417 | 9.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 375 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 290 | 332 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 235 | 5.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 278 | 3.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 194 | 0.012 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 385 | 418 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 385 | 418 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 246 | 287 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 246 | 280 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 162 | 203 | 9.873505 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 404 | 418 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 265 | 279 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_009384738.1 | PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PIE6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology