Basic Information
Locus ID:
Zosma04g19090.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
AMSH-like ubiquitin thioesterase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 28116209 | 28117396 | - | Zosma04g19090.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 33,337.17 Da | 49.12 | 94.39 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 110 | 215 | 7.5E-5 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 115 | 244 | 1.83E-13 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 98 | 289 | 2.9E-44 | - |
| SMART | SM00232 | pad1_6 | 112 | 241 | 0.0013 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 113 | 242 | 14.883553 | IPR037518 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_025817008.1 | - | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PTV6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology