Basic Information
Locus ID:
Zosma04g19070.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 28092687 | 28098116 | + | Zosma04g19070.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 57,653.13 Da | 46.11 | 78.33 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 335 | 509 | 2.39565E-108 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 15 | 102 | 1.7E-11 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 332 | 438 | 4.2E-18 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 334 | 465 | 3.27E-20 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 26 | 117 | 4.45E-5 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 317 | 509 | 1.4E-69 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 11 | 122 | 3.0E-29 | - |
| SMART | SM00232 | pad1_6 | 334 | 462 | 2.2E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 335 | 465 | 29.768049 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 257 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_006442621.1 | - | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P8X5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology