Basic Information
Locus ID:
Zosma04g16080.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 26108147 | 26110581 | - | Zosma04g16080.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 48,311.20 Da | 63.28 | 80.09 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 242 | 285 | 7.51409E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 34 | 152 | 1.47664E-39 | IPR044744 |
| Pfam | PF02225 | PA domain | 63 | 149 | 1.7E-7 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 242 | 285 | 6.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 242 | 298 | 5.81E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 83 | 132 | 1.15E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 290 | 8.7E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 35 | 164 | 5.1E-25 | - |
| SMART | SM00184 | ring_2 | 243 | 284 | 4.2E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 243 | 285 | 12.090947 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 406 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_020262015.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 [Asparagus officinalis] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P613 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology