Basic Information
Locus ID:
Zosma04g14360.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 24224997 | 24227720 | + | Zosma04g14360.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 44,430.64 Da | 33.88 | 93.04 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00504 | Chlorophyll A-B binding protein | 87 | 248 | 5.8E-46 | IPR022796 |
| Pfam | PF03874 | RNA polymerase Rpb4 | 293 | 394 | 3.0E-11 | IPR005574 |
| SUPERFAMILY | SSF103511 | Chlorophyll a-b binding protein | 67 | 275 | 5.62E-59 | - |
| SUPERFAMILY | SSF47819 | HRDC-like | 291 | 398 | 1.18E-14 | IPR010997 |
| Gene3D | G3DSA:1.10.3460.10 | Chlorophyll a/b binding protein domain | 74 | 283 | 3.0E-85 | IPR023329 |
| Gene3D | G3DSA:1.20.1250.40 | - | 284 | 398 | 2.6E-21 | IPR038324 |
| SMART | SM00657 | rpol4neu2 | 282 | 400 | 8.7E-12 | IPR006590 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10340.1 | light harvesting complex of photosystem II 5. photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus | 0 |
| RefSeq | XP_050234525.1 | - | 0 |
| Q9XF89 | Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NLN9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23335 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23586, gene_3771 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022946 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4569, Sbi_jg49266 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5975 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000498 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11022, Sgl16429 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012856, gene:ENSEOMG00000034024 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003400, CQ.Regalona.r1.2BG0025360 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30291280 |
| Apiaceae | Apium graveolens | 3 | Ag3G02319, Ag7G02426, AgUnG00364 |
| Arecaceae | Cocos nucifera | 2 | scaffold007252G000060, scaffold014605G000070 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701619, gene-LOC103720831, gene-LOC120106680 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2631.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G17887, Ftri18G24269, Ftri1G18966 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G10340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028871m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g07090.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g058630.2N, BniB08g035840.2N, BniB08g052350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1617 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1678, Cgl04G0470 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g04070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0206s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g07680 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1286 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037530 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03694, Lb2G15362 |
| Poaceae | Echinochloa crus-galli | 4 | AH04.813, BH03.3553, BH04.793, CH04.791 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0679960, gene-QOZ80_9BG0703380 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064205 |
| Poaceae | Oryza coarctata | 2 | Oco21G003710, Oco22G004480 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g13890.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G116100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502027 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G019200, Chr16G011160, Chr17G010320, Chr31G002730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G140400 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG013910 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G226900.2, TraesCS4B02G089500.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb112260_P001, Zm00001eb168100_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20202, nbis-gene-27356, nbis-gene-48207 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17734, Zma_g18598 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2232, evm.TU.LG06.74 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g12360 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1392, evm.TU.Scaffold_8_RagTag.385 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-20100, nbisL1-mrna-20194, nbisL1-mrna-9886 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13534, nbisL1-mrna-2301 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13342, nbisL1-mrna-17987 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.254, evm.TU.utg000018l.744 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011950 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-17371, nbisL1-mrna-3258, nbisL1-mrna-9047 ... |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11230, nbisL1-mrna-18586 |
| Salicaceae | Populus euphratica | 1 | populus_peu19118 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644850 |
| Solanaceae | Solanum chilense | 2 | SOLCI001227700, SOLCI005092800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023145 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.15413_chr06_+, gene_1290 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0011, TC09G1398 |
| Zosteraceae | Zostera marina | 1 | Zosma04g14360.v3.1 |