Basic Information
Locus ID:
Zosma04g11670.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 15020728 | 15021785 | + | Zosma04g11670.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 36,798.49 Da | 45.27 | 86.05 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 275 | 0.024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 171 | 202 | 0.14 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 26 | 329 | 5.37E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 225 | 332 | 4.1E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 224 | 1.2E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 164 | 202 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 275 | 3.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 116 | 161 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 68 | 109 | 110.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 284 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 278 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 171 | 211 | 8.870959 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 262 | 276 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_020678014.1 | WD repeat-containing protein LWD1 [Dendrobium catenatum] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PHC4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology