Basic Information
Locus ID:
Zosma04g10050.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Short Name:
UBC18
Description:
ubiquitin-conjugating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 10403258 | 10404256 | - | Zosma04g10050.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 23,263.73 Da | 43.35 | 91.01 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 12 | 122 | 9.42542E-37 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 12 | 126 | 4.4E-27 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 9 | 128 | 1.88E-32 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 8 | 150 | 2.2E-33 | IPR016135 |
| SMART | SM00212 | ubc_7 | 11 | 152 | 3.3E-23 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 8 | 163 | 30.673107 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G45050.1 | Ubiquitin-conjugating enzyme family protein. member of ubiquitin-conjugating E2-proteins | 0 |
| RefSeq | XP_022852977.1 | - | 0 |
| P42743 | Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana OX=3702 GN=UBC15 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9P4E5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Zosteraceae | Zostera marina | 2 | Zosma04g10050.v3.1, Zosma04g10100.v3.1 |