Basic Information
Locus ID:
Zosma04g09370.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 8525763 | 8529471 | - | Zosma04g09370.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.98 | 114,018.96 Da | 37.85 | 102.49 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 146 | 350 | 5.76246E-94 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 762 | 982 | 1.61715E-123 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 449 | 739 | 7.87899E-87 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 781 | 929 | 2.0E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 457 | 687 | 4.9E-23 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 172 | 302 | 7.3E-14 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 755 | 990 | 4.69E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 3 | 125 | 5.76E-11 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 169 | 363 | 1.46E-48 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 454 | 746 | 1.44E-42 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 163 | 402 | 8.6E-61 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1 | 135 | 2.0E-20 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 421 | 745 | 6.6E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 747 | 1000 | 8.0E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 790 | 981 | 8.9E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 176 | 350 | 9.3E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 467 | 727 | 29.310081 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 139 | 373 | 19.38121 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 764 | 998 | 17.373751 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1 | 112 | 14.560921 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 275 | 289 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_008777748.2 | putative ABC transporter C family member 15 [Phoenix dactylifera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NTQ4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology