HalophFGD

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Basic Information
Locus ID: Zosma04g09020.v3.1
Species & Taxonomic ID: Zostera marina & 29655
Genome Assembly: GCA_001185155.1
Description: pentatricopeptide repeat-containing protein At1g12700, mitochondrial
Maps and Mapping Data
Chromosome Start End Strand ID
Chr04 7931221 7933308 - Zosma04g09020.v3.1
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.79 78,384.94 Da 38.23 95.11 0.05
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13041 PPR repeat family 90 138 1.8E-9 IPR002885
Pfam PF12854 PPR repeat 264 294 1.2E-7 IPR002885
Pfam PF12854 PPR repeat 368 399 5.5E-7 IPR002885
Pfam PF13041 PPR repeat family 302 349 3.7E-11 IPR002885
Pfam PF13041 PPR repeat family 511 560 3.2E-14 IPR002885
Pfam PF13041 PPR repeat family 406 455 6.7E-12 IPR002885
Pfam PF13041 PPR repeat family 651 693 3.7E-10 IPR002885
Pfam PF12854 PPR repeat 475 505 2.7E-8 IPR002885
Pfam PF13041 PPR repeat family 585 629 2.5E-12 IPR002885
Pfam PF01535 PPR repeat 165 195 0.0019 IPR002885
Pfam PF01535 PPR repeat 201 230 0.0053 IPR002885
SUPERFAMILY SSF81901 HCP-like 546 657 1.75E-6 -
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 160 259 3.5E-18 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 330 399 3.6E-17 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 400 470 3.4E-17 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 571 695 1.2E-31 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 25 159 3.2E-18 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 471 541 1.7E-19 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 260 329 1.6E-15 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 340 372 4.6E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 201 233 2.4E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 479 513 1.4E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 129 156 0.002 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 270 302 2.3E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 165 198 3.5E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 305 338 4.1E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 93 127 4.4E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 618 651 3.0E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 585 617 1.5E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 516 548 1.7E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 409 443 7.2E-10 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 651 685 11.608074 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 407 441 11.980759 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 442 476 8.911594 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 372 406 9.185627 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 337 371 12.199985 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 616 650 12.320559 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 512 546 12.265752 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 477 511 12.364404 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 163 197 10.150222 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 302 336 10.720209 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 198 232 10.490022 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 581 615 11.39981 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 267 301 11.081932 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 91 125 11.125777 IPR002885
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K17964 (leucine-rich PPR motif-containing protein, mitochondrial)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G20300.1 Pentatricopeptide repeat (PPR) superfamily protein. 0
RefSeq XP_008802326.2 protein Rf1, mitochondrial-like [Phoenix dactylifera] 0
Swiss-Prot Q9LN22 Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g20300 PE=2 SV=1 0
TrEMBL A0A0K9P674 - 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Amaranthaceae Chenopodium quinoa 1 CQ.Regalona.r1.4AG0007790
Arecaceae Cocos nucifera 1 scaffold010752G000010
Asparagaceae Asparagus officinalis 1 AsparagusV1_09.1150.V1.1
Cymodoceaceae Cymodocea nodosa 4 gene.Cymno02g00170, gene.Cymno02g02240, gene.Cymno03g06300 ...
gene.Cymno15g00330
Hydrocharitaceae Thalassia testudinum 5 gene.Thate02g06920, gene.Thate08g09850, gene.Thate08g14280 ...
gene.Thate08g21140, gene.Thate09g04990
Poaceae Echinochloa crus-galli 20 AH01.1459, AH01.1700, AH04.2051, AH06.2011, BH01.1832 ...
BH01.1871, BH01.1904, BH01.1913, BH01.1959, BH04.2089, CH01.1979, CH01.1980, CH01.2004, CH01.2019, CH01.2133, CH01.2164, CH03.2508, CH04.2418, CH04.280, Contig3341.1
Poaceae Eleusine coracana subsp. coracana 20 gene-QOZ80_2AG0112480, gene-QOZ80_2AG0112540 ...
gene-QOZ80_2AG0112570, gene-QOZ80_2AG0112590, gene-QOZ80_2AG0113350, gene-QOZ80_2AG0113380, gene-QOZ80_2BG0165660, gene-QOZ80_2BG0165840, gene-QOZ80_2BG0165960, gene-QOZ80_2BG0165970, gene-QOZ80_2BG0166300, gene-QOZ80_2BG0166610, gene-QOZ80_2BG0171980, gene-QOZ80_4AG0321840, gene-QOZ80_4AG0321850, gene-QOZ80_4BG0357420, gene-QOZ80_5AG0366520, gene-QOZ80_5BG0414280, gene-QOZ80_7BG0607290, gene-QOZ80_9BG0713290
Poaceae Hordeum vulgare 21 HORVU.MOREX.r3.1HG0005110.1.CDS1 ...
HORVU.MOREX.r3.1HG0011250.1.CDS1, HORVU.MOREX.r3.1HG0011400.1.CDS1, HORVU.MOREX.r3.1HG0011450.1.CDS1, HORVU.MOREX.r3.1HG0011510.1.CDS1, HORVU.MOREX.r3.1HG0011560.1.CDS1, HORVU.MOREX.r3.1HG0011590.1.CDS1, HORVU.MOREX.r3.1HG0011680.1.CDS1, HORVU.MOREX.r3.1HG0011730.1.CDS1, HORVU.MOREX.r3.1HG0011760.1.CDS1, HORVU.MOREX.r3.1HG0011790.1.CDS1, HORVU.MOREX.r3.1HG0014490.1.CDS1, HORVU.MOREX.r3.1HG0014640.1.CDS1, HORVU.MOREX.r3.1HG0014650.1.CDS1, HORVU.MOREX.r3.1HG0014660.1.CDS1, HORVU.MOREX.r3.1HG0016620.1.CDS1, HORVU.MOREX.r3.6HG0541240.1, HORVU.MOREX.r3.6HG0551520.1.CDS1, HORVU.MOREX.r3.6HG0555030.1.CDS1, HORVU.MOREX.r3.6HG0555060.1.CDS1, HORVU.MOREX.r3.6HG0616090.1.CDS1
Poaceae Lolium multiflorum 45 gene-QYE76_007092, gene-QYE76_007147, gene-QYE76_007305 ...
gene-QYE76_007310, gene-QYE76_007810, gene-QYE76_008963, gene-QYE76_008968, gene-QYE76_008973, gene-QYE76_008975, gene-QYE76_008976, gene-QYE76_008987, gene-QYE76_009002, gene-QYE76_009034, gene-QYE76_009092, gene-QYE76_009093, gene-QYE76_009095, gene-QYE76_009097, gene-QYE76_009104, gene-QYE76_009109, gene-QYE76_009113, gene-QYE76_009326, gene-QYE76_009336, gene-QYE76_009348, gene-QYE76_009351, gene-QYE76_014117, gene-QYE76_016763, gene-QYE76_016764, gene-QYE76_016765, gene-QYE76_017955, gene-QYE76_020091, gene-QYE76_020092, gene-QYE76_020093, gene-QYE76_020094, gene-QYE76_020095, gene-QYE76_020096, gene-QYE76_020102, gene-QYE76_020114, gene-QYE76_020337, gene-QYE76_025544, gene-QYE76_043413, gene-QYE76_053818, gene-QYE76_057962, gene-QYE76_061904, gene-QYE76_063993, gene-QYE76_063995
Poaceae Oryza coarctata 12 Oco01G006140, Oco02G006190, Oco04G003180, Oco07G003250 ...
Oco07G003300, Oco08G003580, Oco16G000440, Oco19G007000, Oco19G007200, Oco19G007340, Oco20G007160, Oco20G007250
Poaceae Oryza sativa 14 LOC_Os04g28234.2, LOC_Os04g28300.1, LOC_Os08g01640.1 ...
LOC_Os08g01650.1, LOC_Os08g01870.1, LOC_Os08g15000.1, LOC_Os10g35090.1, LOC_Os10g35230.1, LOC_Os10g35240.1, LOC_Os10g35260.1, LOC_Os10g35436.1, LOC_Os10g35440.1, LOC_Os10g35640.1, LOC_Os10g35650.1
Poaceae Paspalum vaginatum 17 gene-BS78_01G189400, gene-BS78_05G011700 ...
gene-BS78_05G029200, gene-BS78_05G034100, gene-BS78_05G034200, gene-BS78_05G037400, gene-BS78_05G045700, gene-BS78_05G045800, gene-BS78_05G046300, gene-BS78_05G046500, gene-BS78_05G046600, gene-BS78_05G046900, gene-BS78_05G047400, gene-BS78_05G184700, gene-BS78_05G185100, gene-BS78_05G185600, gene-BS78_06G061400
Poaceae Puccinellia tenuiflora 2 Pt_Chr0500284, Pt_Chr0500285
Poaceae Sporobolus alterniflorus 22 Chr06G030060, Chr09G000530, Chr09G000870, Chr09G001200 ...
Chr09G001810, Chr0G029500, Chr13G022300, Chr18G000360, Chr22G014480, Chr23G016880, Chr24G001020, Chr24G001150, Chr24G001180, Chr24G015790, Chr25G013150, Chr25G013160, Chr25G013190, Chr25G013350, Chr28G001210, Chr30G012910, Chr30G012960, Chr30G013230
Poaceae Thinopyrum elongatum 20 Tel1E01G069500, Tel1E01G115200, Tel1E01G115500 ...
Tel1E01G115600, Tel1E01G116200, Tel1E01G118600, Tel1E01G119100, Tel1E01G119500, Tel1E01G136600, Tel1E01G136800, Tel1E01G138200, Tel1E01G138700, Tel1E01G139300, Tel1E01G139400, Tel1E01G139700, Tel1E01G152600, Tel2E01G903700, Tel2E01G904000, Tel6E01G188300, Tel6E01G556900
Poaceae Triticum dicoccoides 49 gene_TRIDC1AG003330, gene_TRIDC1AG003340 ...
gene_TRIDC1AG007580, gene_TRIDC1AG007610, gene_TRIDC1AG007780, gene_TRIDC1AG009300, gene_TRIDC1AG010140, gene_TRIDC1AG010250, gene_TRIDC1AG010270, gene_TRIDC1BG004200, gene_TRIDC1BG004230, gene_TRIDC1BG009450, gene_TRIDC1BG009460, gene_TRIDC1BG009470, gene_TRIDC1BG009590, gene_TRIDC1BG009630, gene_TRIDC1BG009650, gene_TRIDC1BG009670, gene_TRIDC1BG009890, gene_TRIDC1BG011380, gene_TRIDC1BG011500, gene_TRIDC1BG011510, gene_TRIDC1BG013060, gene_TRIDC1BG051260, gene_TRIDC2AG073710, gene_TRIDC2AG074240, gene_TRIDC2AG074270, gene_TRIDC2AG074350, gene_TRIDC2BG016010, gene_TRIDC2BG080930, gene_TRIDC2BG080970, gene_TRIDC2BG081010, gene_TRIDC5BG041750, gene_TRIDC6AG001570, gene_TRIDC6AG001580, gene_TRIDC6AG010130, gene_TRIDC6AG012860, gene_TRIDC6AG012880, gene_TRIDC6AG012890, gene_TRIDC6AG013070, gene_TRIDC6AG046880, gene_TRIDC6BG002190, gene_TRIDC6BG002200, gene_TRIDC6BG002210, gene_TRIDC6BG005590, gene_TRIDC6BG017940, gene_TRIDC6BG018300, gene_TRIDC6BG018310, gene_TRIDC6BG054690
Poaceae Triticum aestivum 126 TraesCS1A02G031600.1.cds1, TraesCS1A02G031700.1.cds1 ...
TraesCS1A02G054500.1, TraesCS1A02G054700.1.cds1, TraesCS1A02G054800.1.cds1, TraesCS1A02G055500.1.cds1, TraesCS1A02G055800.1, TraesCS1A02G056000.1.cds1, TraesCS1A02G056105.1, TraesCS1A02G057300.1, TraesCS1A02G057400.1, TraesCS1A02G066600.1.cds1, TraesCS1A02G067400.1.cds1, TraesCS1A02G067600.1.cds1, TraesCS1A02G067700.1.cds1, TraesCS1A02G072982.1.cds1, TraesCS1A02G073600.1.cds1, TraesCS1A02G073800.1.cds1, TraesCS1B02G038200.1.cds1, TraesCS1B02G038300.1.cds1, TraesCS1B02G038400.1.cds1, TraesCS1B02G038500.1.cds1, TraesCS1B02G039100.1.cds1, TraesCS1B02G039200.1.cds1, TraesCS1B02G039620.1, TraesCS1B02G039700.1.cds1, TraesCS1B02G071600.1, TraesCS1B02G071617.1.cds1, TraesCS1B02G071642.1, TraesCS1B02G072300.1.cds1, TraesCS1B02G072400.1.cds1, TraesCS1B02G072700.1.cds1, TraesCS1B02G072900.1.cds1, TraesCS1B02G074600.1.cds1, TraesCS1B02G075000.1.cds1, TraesCS1B02G084563.1.cds1, TraesCS1B02G085900.1.cds1, TraesCS1B02G086000.1, TraesCS1B02G092500.1.cds1, TraesCS1B02G092600.1.cds1, TraesCS1B02G315437.1.cds1, TraesCS1B02G315500.1.cds1, TraesCS1D02G032300.1.cds1, TraesCS1D02G033000.1.cds1, TraesCS1D02G033100.1.cds1, TraesCS1D02G033205.1.cds1, TraesCS1D02G055300.1.cds1, TraesCS1D02G055500.1, TraesCS1D02G056200.1.cds1, TraesCS1D02G056400.1.cds1, TraesCS1D02G056600.1, TraesCS1D02G057800.1.cds1, TraesCS1D02G058000.1.cds1, TraesCS1D02G058200.1.cds1, TraesCS1D02G058517.1.cds1, TraesCS1D02G067980.1, TraesCS1D02G068400.1.cds1, TraesCS1D02G068500.1.cds1, TraesCS1D02G068600.1.cds1, TraesCS1D02G068800.1.cds1, TraesCS1D02G068900.1.cds1, TraesCS1D02G069100.1, TraesCS1D02G075800.1.cds1, TraesCS1D02G076500.1.cds1, TraesCS1D02G076800.1.cds1, TraesCS1D02G076900.1, TraesCS1D02G095200.1, TraesCS2A02G478045.1.cds1, TraesCS2A02G526200.1.cds1, TraesCS2A02G530300.1, TraesCS2A02G530600.1.cds1, TraesCS2A02G530700.1.cds1, TraesCS2B02G126905.1.cds1, TraesCS2B02G560000.1.cds1, TraesCS2B02G560700.1.cds1, TraesCS2B02G560741.1.cds1, TraesCS2D02G477278.1.cds1, TraesCS2D02G532100.1.cds1, TraesCS2D02G532182.1.cds1, TraesCS2D02G532300.1.cds1, TraesCS2D02G532600.1.cds1, TraesCS5B02G250800.1.cds1, TraesCS6A02G014500.1.cds1, TraesCS6A02G014800.1.cds1, TraesCS6A02G015000.1.cds1, TraesCS6A02G015958.1.cds1, TraesCS6A02G099300.1.cds1, TraesCS6A02G099318.1.cds1, TraesCS6A02G099389.1.cds1, TraesCS6A02G099407.1, TraesCS6A02G101100.1.cds1, TraesCS6A02G311600.1.cds1, TraesCS6B02G021200.1.cds1, TraesCS6B02G021500.1.cds1, TraesCS6B02G021600.1.cds1, TraesCS6B02G021641.1.cds1, TraesCS6B02G045200.1.cds1, TraesCS6B02G114312.1.cds1, TraesCS6B02G127200.1.cds1, TraesCS6B02G127400.1.cds1, TraesCS6B02G127457.1.cds1, TraesCS6B02G127500.1.cds1, TraesCS6B02G127557.1.cds1, TraesCS6B02G129100.1, TraesCS6B02G129173.1.cds1, TraesCS6B02G129200.1.cds1, TraesCS6B02G341800.1.cds1, TraesCS6D02G018941.1, TraesCS6D02G047700.1.cds1, TraesCS6D02G076500.1, TraesCS6D02G083100.1.cds1, TraesCS6D02G083112.1.cds1, TraesCS6D02G083130.1.cds1, TraesCS6D02G083300.1.cds1, TraesCS6D02G083400.1.cds1, TraesCS6D02G089400.1.cds1, TraesCS6D02G089500.1, TraesCS6D02G089608.1.cds1, TraesCS6D02G290900.1.cds1, TraesCS7B02G469500.1.cds1, TraesCS7D02G231400.1.cds1, TraesCS7D02G487500.1.cds1, TraesCSU02G089563.1.cds1, TraesCSU02G089700.1.cds1, TraesCSU02G089705.1.cds1, TraesCSU02G090200.1.cds1
Poaceae Zea mays 9 Zm00001eb065260_P001, Zm00001eb114490_P001 ...
Zm00001eb114520_P001, Zm00001eb114600_P001, Zm00001eb114660_P001, Zm00001eb114690_P001, Zm00001eb301710_P001, Zm00001eb345130_P002, Zm00001eb345170_P001
Poaceae Zoysia japonica 5 nbis-gene-34357, nbis-gene-43947, nbis-gene-49110 ...
nbis-gene-7954, nbis-gene-7966
Poaceae Zoysia macrostachya 7 Zma_g15222, Zma_g15496, Zma_g19491, Zma_g19493, Zma_g19497 ...
Zma_g19498, Zma_g21114
Posidoniaceae Posidonia oceanica 4 gene.Posoc02g30250, gene.Posoc02g34610, gene.Posoc07g00710 ...
gene.Posoc07g00950
Salicaceae Populus euphratica 1 populus_peu19919
Zosteraceae Zostera marina 4 Zosma02g14330.v3.1, Zosma04g09020.v3.1, Zosma05g28260.v3.1 ...
Zosma06g26890.v3.1
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