Basic Information
Locus ID:
Zosma04g06340.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 5155563 | 5190234 | + | Zosma04g06340.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 131,112.84 Da | 41.29 | 78.89 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 59 | 183 | 1.89122E-37 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 200 | 528 | 1.21645E-165 | - |
| Pfam | PF00917 | MATH domain | 64 | 184 | 2.8E-19 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 627 | 879 | 9.2E-75 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 202 | 523 | 3.2E-45 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 889 | 1098 | 9.1E-53 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 197 | 552 | 6.48E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 55 | 188 | 3.43E-39 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 56 | 198 | 4.0E-50 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 688 | 804 | 1.3E-41 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 199 | 527 | 5.6E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 805 | 902 | 1.6E-27 | - |
| SMART | SM00061 | math_3 | 59 | 163 | 3.6E-21 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 57 | 182 | 37.599213 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 202 | 526 | 39.802856 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 203 | 218 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 442 | 459 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 58 | - | - |
| Coils | Coil | Coil | 542 | 562 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_038985458.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Phoenix dactylifera] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9AN73 | ubiquitinyl hydrolase 1 OS=Phoenix dactylifera OX=42345 GN=LOC103707271 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology