Basic Information
Locus ID:
Zosma04g05650.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 4441653 | 4443962 | - | Zosma04g05650.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 45,738.89 Da | 45.65 | 111.16 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 72 | 115 | 4.7E-8 | IPR001841 |
| Pfam | PF00083 | Sugar (and other) transporter | 200 | 407 | 1.8E-43 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 202 | 403 | 3.92E-23 | IPR036259 |
| SUPERFAMILY | SSF57850 | RING/U-box | 72 | 121 | 5.65E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 122 | 1.1E-13 | IPR013083 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 181 | 407 | 8.3E-47 | IPR036259 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 73 | 115 | 11.559839 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26340.1 | Major facilitator superfamily protein. Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD. | 0 |
| RefSeq | XP_013612693.1 | - | 0 |
| Q94AZ2 | Sugar transport protein 13 OS=Arabidopsis thaliana OX=3702 GN=STP13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9NXD9 | RING-type domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_530G00020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg8121 |
| Apiaceae | Apium graveolens | 1 | Ag2G00720 |
| Poaceae | Echinochloa crus-galli | 1 | BH01.3244 |
| Poaceae | Oryza coarctata | 2 | Oco13G003610, Oco17G002020 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G012790 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG023930 |
| Zosteraceae | Zostera marina | 2 | Zosma04g05630.v3.1, Zosma04g05650.v3.1 |