Basic Information
Locus ID:
Zosma04g05450.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Guanine nucleotide-binding protein subunit beta-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 4241246 | 4242916 | + | Zosma04g05450.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 35,493.75 Da | 30.60 | 87.19 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 7 | 318 | 2.75765E-84 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 107 | 142 | 7.3E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 64 | 100 | 2.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 196 | 230 | 9.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 270 | 0.0056 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 10 | 43 | 0.0038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 155 | 188 | 1.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 318 | 8.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 318 | 2.24E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 323 | 4.1E-129 | IPR015943 |
| SMART | SM00320 | WD40_4 | 61 | 100 | 3.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 191 | 230 | 4.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 188 | 6.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 273 | 319 | 0.0093 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 270 | 0.28 | IPR001680 |
| SMART | SM00320 | WD40_4 | 103 | 142 | 4.8E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 198 | 239 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 154 | 191 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 154 | 191 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 68 | 109 | 14.819399 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 324 | 9.019239 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 110 | 142 | 12.604675 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 295 | 324 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 198 | 235 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 11 | 45 | 9.071966 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 110 | 142 | 15.287253 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 68 | 104 | 11.73468 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 217 | 231 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 87 | 101 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 175 | 189 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 175 | 189 | 2.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 87 | 101 | 2.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 129 | 143 | 2.0E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18130.1 | receptor for activated C kinase 1C. Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1C has no phenotype on its own and probably acts redundantly with RACK1A and RACK1B. | 0 |
| RefSeq | XP_009405003.1 | PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Musa acuminata subsp. malaccensis] | 0 |
| P93340 | Small ribosomal subunit protein RACK1 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NTX5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg13319, jg13320, jg27000 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19983, gene_23890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002270 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g111970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg32204, Sbi_jg57196 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24934 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022192 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53978, Sgl59303 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004264, gene:ENSEOMG00000021259 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0014830, CQ.Regalona.r1.5BG0015800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150310 |
| Apiaceae | Apium graveolens | 2 | Ag11G03770, Ag5G00067 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G005670, COCNU_02G005690, COCNU_06G008140 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103716866, gene-LOC103719002, gene-LOC103722987 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3204.V1.1, AsparagusV1_05.750.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G23993, Ftri6G09016 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18080.1, AT1G48630.1, AT3G18130.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10008183m.g.v1.0, Thhalv10011646m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g16100.v2.2, Sp1g35600.v2.2, Sp3g16240.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB01g046490.2N, BniB03g007440.2N, BniB03g027900.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2865 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3013 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g02150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0241s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00270 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.268 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00018619, Pov_00033244, Pov_00033291 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G16516, Lb3G16524, Lb5G29571, Lb6G29907 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2797, AH05.1476, BH02.2881, BH05.1645, CH02.3653 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0029020, gene-QOZ80_1BG0079240 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0084340.1, HORVU.MOREX.r3.3HG0280990.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015641, gene-QYE76_054631 |
| Poaceae | Oryza coarctata | 4 | Oco01G017580, Oco02G017820, Oco09G016160, Oco10G015950 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g49290.1, LOC_Os05g47890.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G234800, gene-BS78_09G227600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0503641, Pt_Chr0602392, Pt_Chr0602403 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G015230, Chr02G012360, Chr03G013770, Chr05G021280 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G615800, Tel3E01G441700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG055510, gene_TRIDC1BG063850 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G378000.1, TraesCS1B02G398800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb294990_P001, Zm00001eb342960_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-12605, nbis-gene-13743, nbis-gene-24932 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g10901, Zma_g10902, Zma_g27334, Zma_g28749, Zma_g8453 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2251, evm.TU.LG05.754, evm.TU.LG14.1424 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g19330, gene.Posoc04g03680 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60404.5, evm.TU.Scaffold_11_RagTag.642 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14300, nbisL1-mrna-28642 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3231, nbisL1-mrna-4299 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12332, nbisL1-mrna-1651 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.4 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000606, Maker00008692 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14440, nbisL1-mrna-948 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19212, nbisL1-mrna-8389 |
| Salicaceae | Populus euphratica | 2 | populus_peu28285, populus_peu29736 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599878, gene-LOC132633235 |
| Solanaceae | Solanum chilense | 2 | SOLCI000423000, SOLCI006758900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107007696, gene-LOC107014559, gene-LOC107023263 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12652 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1040, TC09G1699 |
| Zosteraceae | Zostera marina | 2 | Zosma04g05450.v3.1, Zosma05g32250.v3.1 |