Basic Information
Locus ID:
Zosma04g04190.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 3321545 | 3324768 | - | Zosma04g04190.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 37,926.66 Da | 43.58 | 72.71 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 65 | 103 | 2.1408E-15 | - |
| CDD | cd03829 | Sina | 181 | 309 | 1.0912E-64 | - |
| Pfam | PF03145 | Seven in absentia protein family | 109 | 308 | 8.8E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 121 | 312 | 4.05E-47 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 57 | 106 | 4.54E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 109 | 3.1E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 174 | 1.7E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 175 | 308 | 9.8E-37 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 120 | 180 | 14.066055 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 67 | 103 | 9.464913 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 339 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_038986143.1 | E3 ubiquitin-protein ligase SINAT5-like [Phoenix dactylifera] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PWP2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology