Basic Information
Locus ID:
Zosma04g01580.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 1234148 | 1235638 | - | Zosma04g01580.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 52,064.68 Da | 37.61 | 80.33 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 41 | 383 | 5.5E-57 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 284 | 354 | 1.15E-11 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 38 | 387 | 3.77E-52 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 57 | 383 | 2.7E-78 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 283 | 354 | 2.7E-78 | IPR029070 |
| SMART | SM00636 | 2g34 | 38 | 383 | 5.0E-59 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 38 | 399 | 50.207115 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19820.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_038973181.1 | class V chitinase-like [Phoenix dactylifera] | 0 |
| A0A1B1J8Z2 | Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A843TLB1 | GH18 domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_004832 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology