Basic Information
Locus ID:
Zosma03g35710.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Cleavage and polyadenylation specificity factor subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 38937854 | 38939633 | - | Zosma03g35710.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 40,852.10 Da | 51.23 | 100.47 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 309 | 353 | 2.66919E-18 | - |
| Pfam | PF13639 | Ring finger domain | 309 | 351 | 1.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 295 | 355 | 1.31E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 290 | 358 | 2.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 310 | 350 | 9.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 310 | 351 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_015895373.2 | - | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PAM6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology