Basic Information
Locus ID:
Zosma03g34760.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 38398769 | 38401416 | + | Zosma03g34760.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 45,667.88 Da | 37.79 | 87.80 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 71 | 393 | 6.42124E-179 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 74 | 336 | 1.3E-115 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 72 | 335 | 1.98E-53 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 336 | 393 | 4.45E-16 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 101 | 398 | 6.7E-101 | IPR027417 |
| SMART | SM00382 | AAA_5 | 123 | 294 | 3.1E-10 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 71 | 391 | 4.7E-140 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 102 | 260 | 28.477377 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 265 | 340 | 27.059614 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 279 | 287 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 311 | 340 | 4.6E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 365 | 382 | 4.6E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 276 | 304 | 4.6E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 193 | 222 | 4.6E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 159 | 188 | 4.6E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 231 | 260 | 4.6E-74 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 72 | 397 | 44.246845 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_010904644.1 | DNA repair protein recA homolog 1, chloroplastic [Elaeis guineensis] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P847 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology