Basic Information
Locus ID:
Zosma03g34580.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 38263898 | 38270715 | + | Zosma03g34580.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 108,393.87 Da | 45.40 | 70.86 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 500 | 804 | 6.49984E-130 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 502 | 803 | 3.1E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 106 | 143 | 6.5E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 102 | 148 | 2.79E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 497 | 813 | 9.22E-86 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 99 | 148 | 3.1E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 493 | 812 | 5.2E-92 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 501 | 806 | 50.14566 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 106 | 143 | 11.758225 | IPR002893 |
| ProSiteProfiles | PS51007 | Cytochrome c family profile. | 615 | 740 | 7.131732 | IPR009056 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 502 | 517 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 106 | 143 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 865 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 870 | 890 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_010942663.1 | ubiquitin carboxyl-terminal hydrolase 17 [Elaeis guineensis] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PH92 | Ubiquitin carboxyl-terminal hydrolase OS=Zostera marina OX=29655 GN=ZOSMA_23G00950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology