Basic Information
Locus ID:
Zosma03g32810.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
endonuclease activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 37300552 | 37302477 | - | Zosma03g32810.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 71,294.54 Da | 34.14 | 98.49 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 501 | 525 | 0.011 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 323 | 353 | 1.5E-4 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 423 | 471 | 5.1E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 186 | 212 | 0.043 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 215 | 246 | 0.072 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 294 | 314 | 1.2 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 181 | 584 | 1.46E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 289 | 393 | 5.2E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 133 | 268 | 2.5E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 460 | 604 | 2.8E-15 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 426 | 458 | 8.3E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 323 | 357 | 8.1E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 321 | 355 | 10.128299 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 213 | 248 | 10.939435 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 424 | 458 | 11.619036 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08070.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. Encodes a chloroplast RNA editing factor. | 0 |
| RefSeq | XP_042513774.1 | - | 0 |
| Q9LN01 | Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NJA3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah009743 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12129, Sbi_jg47069 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21351 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020368 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl61527, Sgl61549 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000040006 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0003540, CQ.Regalona.r1.9AG0021020 |
| Apiaceae | Apium graveolens | 1 | Ag11G04930 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0007 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1072, evm.TU.LG12.90 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1195, evm.TU.LG22.952 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16620 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.926 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16686, nbisL1-mrna-16759 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10433 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17232 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000025l.48 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012187 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-20187, nbisL1-mrna-20188, nbisL1-mrna-20591 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-9137, nbisL1-mrna-9139, nbisL1-mrna-9140 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1063 |
| Zosteraceae | Zostera marina | 3 | Zosma03g32740.v3.1, Zosma03g32750.v3.1, Zosma03g32810.v3.1 |