Basic Information
Locus ID:
Zosma03g32740.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Diphthamide synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 37273851 | 37276845 | - | Zosma03g32740.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 48,135.22 Da | 33.51 | 95.71 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01994 | Alpha_ANH_like_IV | 2 | 164 | 5.53705E-68 | IPR002761 |
| Pfam | PF13041 | PPR repeat family | 211 | 259 | 3.0E-10 | IPR002885 |
| Pfam | PF01902 | Diphthamide synthase | 1 | 166 | 6.2E-24 | IPR002761 |
| Pfam | PF01535 | PPR repeat | 289 | 313 | 0.0066 | IPR002885 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 1 | 185 | 3.91E-44 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 1 | 157 | 7.2E-55 | IPR014729 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 210 | 409 | 1.8E-30 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 214 | 246 | 5.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 289 | 312 | 0.0032 | IPR002885 |
| TIGRFAM | TIGR00290 | MJ0570_dom: MJ0570-related uncharacterized domain | 1 | 167 | 6.0E-41 | IPR002761 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 212 | 246 | 11.619036 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04480.1 | endoribonucleases. | 0 |
| RefSeq | XP_042513776.1 | - | 0 |
| Q9SY02 | Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9NJA3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah009743 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12129, Sbi_jg47069 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21351 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020368 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl61527, Sgl61549 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000040006 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0003540, CQ.Regalona.r1.9AG0021020 |
| Apiaceae | Apium graveolens | 1 | Ag11G04930 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0007 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1072, evm.TU.LG12.90 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1195, evm.TU.LG22.952 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16620 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.926 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16686, nbisL1-mrna-16759 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10433 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17232 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000025l.48 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012187 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-20187, nbisL1-mrna-20188, nbisL1-mrna-20591 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-9137, nbisL1-mrna-9139, nbisL1-mrna-9140 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1063 |
| Zosteraceae | Zostera marina | 3 | Zosma03g32740.v3.1, Zosma03g32750.v3.1, Zosma03g32810.v3.1 |