Basic Information
Locus ID:
Zosma03g28880.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 35256492 | 35257838 | + | Zosma03g28880.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 48,896.90 Da | 88.46 | 60.22 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 228 | 270 | 3.1541E-22 | - |
| Pfam | PF14369 | zinc-ribbon | 14 | 45 | 3.9E-13 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 314 | 426 | 2.7E-41 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 229 | 270 | 1.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 276 | 5.96E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 276 | 1.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 229 | 269 | 8.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 229 | 270 | 12.164712 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 448 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_010262557.1 | PREDICTED: E3 ubiquitin-protein ligase RDUF1-like [Nelumbo nucifera] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NTE4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology