Basic Information
Locus ID:
Zosma03g28450.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 35033542 | 35048625 | + | Zosma03g28450.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 107,063.73 Da | 54.08 | 79.40 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 253 | 362 | 7.0E-6 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 131 | 365 | 3.3E-17 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 702 | 766 | 1.47E-6 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 830 | 906 | 3.31E-10 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 826 | 906 | 4.3E-8 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 130 | 404 | 9.5E-23 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 696 | 775 | 8.7E-6 | - |
| SMART | SM00577 | forpap2 | 197 | 371 | 3.1E-10 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 702 | 766 | 0.016 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 829 | 897 | 3.3E-5 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 701 | 767 | 10.678736 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 828 | 898 | 10.727289 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 136 | 387 | 14.999635 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 921 | 945 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010918441.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Elaeis guineensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PYY1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology