Basic Information
Locus ID:
Zosma03g28400.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 34998780 | 35008284 | - | Zosma03g28400.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 85,810.82 Da | 48.10 | 75.79 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 270 | 1.20718E-65 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 130 | 4.7E-8 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 613 | 771 | 3.9E-48 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 214 | 1.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 54 | 87 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 172 | 4.1E-12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 10 | 46 | 0.004 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 295 | 2.24E-72 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 145 | 1.9E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 146 | 319 | 3.2E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 9.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 46 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 2.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 3.1E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 6.8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 90 | 11.365591 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 13 | 47 | 8.57106 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 182 | 217 | 12.051043 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 55 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 18.662491 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 14.450121 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 15.253835 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 15.253835 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 12.024679 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 8.8E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 8.8E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 8.8E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 2 | 774 | 20.294226 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 581 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010935617.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Elaeis guineensis] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9PYX6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology