Basic Information
Locus ID:
Zosma03g26430.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 33605062 | 33619008 | - | Zosma03g26430.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 47,418.93 Da | 19.53 | 78.70 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 153 | 188 | 4.5E-6 | IPR001680 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 121 | 143 | 5.6E-7 | IPR000571 |
| Pfam | PF00400 | WD domain, G-beta repeat | 276 | 309 | 0.0034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 314 | 348 | 6.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 148 | 437 | 6.77E-43 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 119 | 144 | 2.49E-6 | IPR036855 |
| Gene3D | G3DSA:3.30.1370.210 | - | 30 | 142 | 1.2E-8 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 143 | 228 | 2.8E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 247 | 438 | 4.1E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 272 | 309 | 3.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 436 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 149 | 188 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 349 | 4.6E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 30 | 54 | 0.19 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 119 | 144 | 0.0044 | IPR000571 |
| SMART | SM00320 | WD40_4 | 228 | 265 | 350.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 319 | 348 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 29 | 55 | 11.197066 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 279 | 312 | 9.361965 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 117 | 145 | 14.257913 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 156 | 188 | 11.602863 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 279 | 318 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 156 | 197 | 14.652308 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 296 | 310 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 296 | 310 | 1.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 175 | 189 | 1.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 336 | 350 | 1.0E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_020687963.1 | zinc finger CCCH domain-containing protein 17 [Dendrobium catenatum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PZ18 | Zinc finger CCCH domain-containing protein 17 OS=Zostera marina OX=29655 GN=ZOSMA_133G00030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology