Basic Information
Locus ID:
Zosma03g25420.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 32834173 | 32842871 | - | Zosma03g25420.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 47,794.14 Da | 43.21 | 69.51 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 266 | 340 | 2.75985E-32 | - |
| CDD | cd12619 | RRM2_PUB1 | 145 | 219 | 8.83784E-50 | - |
| CDD | cd12352 | RRM1_TIA1_like | 61 | 131 | 4.59355E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 146 | 216 | 8.1E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 61 | 127 | 2.3E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 268 | 333 | 3.2E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 23 | 137 | 4.16E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 136 | 224 | 2.96E-26 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 259 | 344 | 1.11E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 144 | 225 | 1.5E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 241 | 344 | 1.6E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 143 | 5.2E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 60 | 129 | 1.2E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 145 | 218 | 2.1E-21 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 267 | 336 | 2.6E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 144 | 222 | 16.909462 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 59 | 133 | 15.613252 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 266 | 340 | 14.948091 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 262 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_042486815.1 | oligouridylate-binding protein 1-like [Macadamia integrifolia] | 0 |
| Q9LJH8 | Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PRY9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology