Basic Information
Locus ID:
Zosma03g23750.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 31682010 | 31685840 | - | Zosma03g23750.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 51,081.96 Da | 54.08 | 70.33 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 276 | 301 | 5.1E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 362 | 390 | 6.0E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 324 | 352 | 6.6E-10 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 320 | 354 | 2.35E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 356 | 392 | 5.89E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 394 | 425 | 7.06E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 271 | 302 | 2.16E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 267 | 305 | 2.4E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 393 | 425 | 1.1E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 355 | 392 | 1.5E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 316 | 354 | 1.5E-11 | - |
| SMART | SM00547 | zf_4 | 278 | 302 | 0.0011 | IPR001876 |
| SMART | SM00547 | zf_4 | 397 | 421 | 3.4E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 326 | 350 | 4.7E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 364 | 388 | 2.8E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 324 | 353 | 10.579303 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 362 | 391 | 10.579303 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 276 | 305 | 9.111317 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 395 | 424 | 9.529128 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 328 | 347 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 280 | 299 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 366 | 385 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 399 | 418 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010916149.1 | zinc finger protein VAR3, chloroplastic [Elaeis guineensis] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PC35 | Zinc finger (Ran-binding) family protein OS=Zostera marina OX=29655 GN=ZOSMA_30G00870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology